Thermo-flux documentation
=========================

Tools for thermodynamically constrained FBA [[1](#references)]

Current Features
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Installation
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Requirements

* Python >= 3.11
* Gurobi (https://support.gurobi.com/hc/en-us/articles/360044290292-How-do-I-install-Gurobi-for-Python-)

For more details, see :ref:`installation`.

How to use and examples 
***********************
Example usage notebooks can be found in the examples directory. 

How to cite us
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.. note::

   This project is under active development.

Contents
--------
.. toctree::
   :hidden:
   :maxdepth: 2

   self
   Installation
   Quickstart
   extended_info
   Infeasible_gurobi_model_tips
   thermoflux_iMM904_ENS
   api

References
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1 .Niebel B, Leupold S, Heinemann M. An upper limit on Gibbs energy dissipation governs cellular metabolism. Nat Metab. 2019 Jan;1(1):125-132. doi: 10.1038/s42255-018-0006-7. Epub 2019 Jan 7 PMID: 32694810.